NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181577_10261873

Scaffold Ga0181577_10261873


Overview

Basic Information
Taxon OID3300017951 Open in IMG/M
Scaffold IDGa0181577_10261873 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1134
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004493Metagenome436Y
F018289Metagenome236Y
F029594Metagenome188Y
F048640Metagenome148N

Sequences

Protein IDFamilyRBSSequence
Ga0181577_102618731F048640AGGAMQPKELNAHARCRYEPTRVQKQLECRLFGKTFRSVAAAARNYELSLSTVYQWHHEGRHRETFPKTKRWDKW
Ga0181577_102618732F029594GAGGMLPDEMEAEKNRKIIVAQADEIDILKRNVKDLQENLATCHKRIKELIDAT
Ga0181577_102618733F004493GAGGMHHKVTKNKELGFTDEQWGQLIEGNGLLLMWFIEWNQKDKDNPLQIQDFFKLKYNQSAGCDPWPMKGKVSLDGKYVSEYSDDDDLEPYFMIDTPDGVGYIYPYAFVALPKKGGGHSIVRM
Ga0181577_102618734F018289N/ASFITLQGKEDTMTQFTRSQLNLLRKQLQETIDNANLSDITIEVGNCSYAGGEATFKVKCVLKGAKTREQIDLEYYAEMHGIDTTAIAKLQGEDMSIIGYKSRARKKPWILQRLRDGAEFVCSDHTAKQFFKKREEIADAP
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