Scaffold Ga0181577_10046432

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0181577_10046432

Scaffold Ga0181577_10046432

Overview

Basic Information
Taxon OID	3300017951 Open in IMG/M
Scaffold ID	Ga0181577_10046432 Open in IMG/M
Source Dataset Name	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaG (megahit assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3103
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (54.55%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	31.972	Long. (^o)	-81.028	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000589	Metagenome	1006	Y
F001650	Metagenome	657	Y
F087058	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181577_100464322	F087058	N/A	MKVKEKDYEDIYWCIVTDQVPAEIINEYFEDKNFYRYYVIRRGQDDK
Ga0181577_100464323	F000589	N/A	MAHSKHIKGDRAELIAAEYYISLGYSVHRNMSGHGPVDLVLIEPDSMGEVILVDVKALSLRTKNGWKVNRAPTKKQKELNVQLIFVDLDTREIHQSMPRKQNKKIKNVVDIKEYMRTHAP
Ga0181577_100464329	F001650	AGGAG	MAKTLIILVLLFDGTLVQERYELGREMPVSECLQYGDDHREAIAEYKEFKDSLKNGWYLKDGRGTIQGHMCE

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