| Basic Information | |
|---|---|
| Taxon OID | 3300017951 Open in IMG/M |
| Scaffold ID | Ga0181577_10006806 Open in IMG/M |
| Source Dataset Name | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaG (megahit assembly) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 8682 |
| Total Scaffold Genes | 24 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 24 (100.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 31.972 | Long. (o) | -81.028 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003073 | Metagenome / Metatranscriptome | 509 | Y |
| F026258 | Metagenome / Metatranscriptome | 198 | Y |
| F028350 | Metagenome / Metatranscriptome | 192 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0181577_1000680612 | F028350 | GGTGG | MIRRSGTVNPVAKSMLQRRRAAQVVQDKTKYNRKKEKDRASKVRSNEELENPKGGWQA |
| Ga0181577_1000680620 | F003073 | AGGAG | MAKKLHNMTADERIAYWEQEREKERIKRRNRIGKLSIDQRAAVINVNKLLDSILDTALYPDMGGIKMVSAYELQELSDAKDTLAFQFNL |
| Ga0181577_100068068 | F026258 | GGAG | MAIDIEQKIHLMYGCTKDDLDELIAEADEPFMGGRRMLAMSILSDAQERIAIGHGDIARQYINRAKYVINGMEK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |