NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187847_10000036

Scaffold Ga0187847_10000036


Overview

Basic Information
Taxon OID3300017948 Open in IMG/M
Scaffold IDGa0187847_10000036 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)147913
Total Scaffold Genes143 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)107 (74.83%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002165Metagenome / Metatranscriptome588Y
F003396Metagenome / Metatranscriptome489Y
F004841Metagenome / Metatranscriptome421Y
F044181Metagenome / Metatranscriptome155Y
F066938Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0187847_10000036123F044181GGCGGMLLRPGTIALSRGAPLLFGLELAGPYMFLLAAVVGGAVGWGLFALNNLMRRAALLIALTGIVMLVPSVSAATVMVQPKALAIGGLGIIVRVMVAWYLSRPEVADQFRSRA
Ga0187847_1000003613F066938GAGVAENDSDFTVLLEAKDVRRSVIFSLAEHAILVRDDEGNPMFDVSLTFNDKGDCKLNANERELDFWQVRRMALEELLFRAF
Ga0187847_10000036138F004841N/AMLGTVKKSRKPEKSRKTARAPRIRVPNNERALFTIDERRLVGVLQRLSLTGGSAVLSKGPIPQGTMGEIVMSTVYGKVTAQIEFLQTGADGIPLAQAFRFLAMEDSSSRRFAAAALQMEKEGFSDAPATSSSALHAPAGEALGMLLHSVRRLAATLVANRSSSAKS
Ga0187847_10000036140F003396GGAMPRKGKKKVFSAAKVVREMARERVGSPKPSQLVLAKKAKPERHKATLAKLLTDE
Ga0187847_10000036143F002165GGAMPDPDPRVEQLLARYELDLARVKDAFALLGVNPCSWCRKFFRRSDPGALFDAGEMVCYGCLHEWWTHCCAQLSIKDRQSLEGKLVFWLREHHHAEFFKDPAKLPDPSLQELKIVATCLECRGTGKLGGQADCRYCAGRGTVWVIVSRNQP
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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