NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187879_10117320

Scaffold Ga0187879_10117320


Overview

Basic Information
Taxon OID3300017946 Open in IMG/M
Scaffold IDGa0187879_10117320 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1519
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000092Metagenome / Metatranscriptome2385Y
F004291Metagenome / Metatranscriptome445Y
F007884Metagenome / Metatranscriptome343Y

Sequences

Protein IDFamilyRBSSequence
Ga0187879_101173201F007884N/ALESRFWLSYRPYESKNVAREWFIGPALTWLRSQDDRIAEVTQQRSGGDVLLAGITSYVGVRPGMHVWLAMDWDVAHSTGPLFNPVRRHVSLGITQQFRLHL
Ga0187879_101173202F004291AGGAGGMNIKIFARLVLFGSMIVVGPVAQAQINHIEMRVEGMT
Ga0187879_101173203F000092GAGVKQHLGRQSGVQKVDVNLLDGRVDITPKEDERIEPAQLLKATYDSGVTVAEMDVTARGTIVKDSSGRLALQVEPNRSWAFAANELSKGLESLAGTPTVVTVQGQVYKKPAGKKKADPSAPPTLLILEVQKKE
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