NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187879_10000051

Scaffold Ga0187879_10000051


Overview

Basic Information
Taxon OID3300017946 Open in IMG/M
Scaffold IDGa0187879_10000051 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)102662
Total Scaffold Genes100 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)68 (68.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003084Metagenome / Metatranscriptome508Y
F009411Metagenome / Metatranscriptome318Y
F009619Metagenome / Metatranscriptome315Y

Sequences

Protein IDFamilyRBSSequence
Ga0187879_1000005163F009411AGGMLNDELRKQAGIARLASDLRSAKIELLSAQCATDRLRLQYSVADIVSFGERQALRGAIASAGALCRFFSSIEDQLKQTEQE
Ga0187879_1000005183F009619GGAMAQECQKGPPRALLLRDLDHSPLSSPFGKVWSRMGGFSILTNRKRAVVALVHSVVFLLIAVRQMVAANPASGIWVPSTVPTGTWILCGVFAVVSSILLWLFVISRGWMEKFYFGFCTVSASSGLLRTAAGDQAFHAGIYIRVIMLVSAVLVGMLIVREHSREAPECAETSS
Ga0187879_1000005199F003084GGAGGMSGKQAVIAVLLMAMCILRGSAAAQDEKNELTGMVGRMVISDQGIVGATYPNPFVRSGKGLSFEIEYARRLLGKEVYAISGEVPVVFNLDEDLGSGSDVVPKDYKQIFVTPALRFNLFPATAVSPWVSLGGGFAYFNENKNLNYYGTNPGGSSTSGVLQGGLGVDVRPFRARFSHFGFRAEVRDFWSGTPKLPLADTGKTRQHNYLIGAGVTWHF
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