NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187879_10000031

Scaffold Ga0187879_10000031


Overview

Basic Information
Taxon OID3300017946 Open in IMG/M
Scaffold IDGa0187879_10000031 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)137469
Total Scaffold Genes108 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)80 (74.07%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000279Metagenome / Metatranscriptome1383Y
F002101Metagenome / Metatranscriptome593Y
F015836Metagenome / Metatranscriptome251Y

Sequences

Protein IDFamilyRBSSequence
Ga0187879_1000003110F000279GAGMTHKPENAAIEEEIILPENLLPLGSVLGEGVTPQDISMVLAKVFHVQYAEVALLRLEGGLLKFVFPEHLRTTGAIPISSKAVAAHTALSKKAEIFNNFARVKHASIFETIKPVGAEEDSPAPPAPIQKLMSVPILDTNSTVLGVLQISRKGLDPRFTQDFSREDLHDLELAAGLLAGSPVMLAN
Ga0187879_1000003176F015836N/AMALRKDHGLSLLEMVITLCIALIMCAVTFIAIRPMLNQSNVDSAYDTTLMALRNTRNLAITQSHEYIVTFTPGAGVVPGTIQVQYQPPTVGGIAQPIQQVINYTIPLGVNFQMQAGFPASLPDGFGTGVNPIDFESTPGVPLNYVVFYPDGSAQDVLGNYVTGVVYMTRPNDSMFSSRAVTVWGATGRIRGWRLAQPGGVWSWVQQ
Ga0187879_1000003196F002101AGGAGMTTPVIALPVSAADASSVKKKRVLLLDTSQTKRDLRADVMRKLGIEVDCAADVLEARCWWRADLYNLVLINGIEETDERDKFCTDIRSANPPQRVAFFVGGPEYLALAPHSDGALAAEDADALHQEMVAALLAQTSQHSSQRWGILEACKRISSVRSVSEARSRAIREIPRPSRWAEAIEHHSEEIHSQPTFAKTITAESEGLV

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