NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187808_10001207

Scaffold Ga0187808_10001207


Overview

Basic Information
Taxon OID3300017942 Open in IMG/M
Scaffold IDGa0187808_10001207 Open in IMG/M
Source Dataset NameWetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8972
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion.

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)35.9061Long. (o)-76.1569Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036462Metagenome / Metatranscriptome170Y
F042607Metagenome158Y

Sequences

Protein IDFamilyRBSSequence
Ga0187808_100012073F036462AGGAMTQQVRLGDLMGTELEEDFLEFDLTDIQQVLENLRETDAIDLSHAEQLQQQALRGADILTGYLGKITKTVGYLEAKVNSTKNKVSLEYNAAEGRTTMEMRKWAGESSPEVEEVQIKLAHAKASKLVLDRKFEILVKAHHHFKDIAQGLRKSILGYSSSTPTTEPVPHGYE
Ga0187808_100012075F042607AGGAGMTLRIVCNKRLDMSEDEWAMYQKIVKSYTTTTNKGEDLFIDLFETDERGIITFLRPPSARRTTLEVFLFLMALMTHQHLRLMQEQVDDLARQVKEKLKDL
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