| Basic Information | |
|---|---|
| Taxon OID | 3300017935 Open in IMG/M |
| Scaffold ID | Ga0187848_10007645 Open in IMG/M |
| Source Dataset Name | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_40 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 6692 |
| Total Scaffold Genes | 8 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (37.50%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Minnesota | |||||||
| Coordinates | Lat. (o) | 47.5028 | Long. (o) | -93.4828 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F046997 | Metagenome | 150 | N |
| F050262 | Metagenome / Metatranscriptome | 145 | N |
| F057234 | Metagenome | 136 | N |
| F058854 | Metagenome | 134 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0187848_100076452 | F046997 | AGGA | VYTTFAYRTLSLIGCSLALGAAAGPVTVGDVRTERDSIPRALAQDKTEAIAIFRASQQPLLWQRAMSGISCIENKLQSTPTNAAAESSALLLTLGDKKLTLHADVLKKSYTACQPTNGLPLYVDKNRRRAPETYVDPEILKGGVNILTLKGTNQVPACLSGEALENYLRLRCDQKLQPGDYWRELHARKLDDEQLARLRYYDYLDTHVALRSVPVYQCTEIRSRNH |
| Ga0187848_100076453 | F058854 | GGA | MWLCVLCLSTSARKSEAEIIDHLNARWQGAAWQANRLELSGLTYQGALFPLITQGPGAFSLPSGAFVLRLHVLPLNARDNEPLLALWGRIADPRDKPLARLFLRKGRLVWVCPIDAKGDSLFDAPKEVELETRELTAGLWATVDVLINPMPYQQTFGWNLEMNHPQDPAKPSGKPLHLARQLTAADWTLQRIEMPRLHAAWLGQMELLPADTRPAQLRPNILRR |
| Ga0187848_100076456 | F050262 | N/A | MKITCHRRQRTSGATLVEVVAAIIILGLVVTGVAQFLLVSKINVYTDNVKTGVLQALSDTIVKYQTMSVGETNVPVGEDLRPHIPSGTMRLEKSGPANGVYTLQGSVTWRAFPHGDDSFLFHEQLTLAVPE |
| Ga0187848_100076458 | F057234 | N/A | ARFQLVGWQELGSIFCDYGLLAGRSLQLFNCRAKTFLLDCPVPCDYALKVDAMTLPGERVVEMFQLPAPPWYYRLEEDALALARQSQDLAEDAGLAGLFSSLTQ |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |