NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187807_1000463

Scaffold Ga0187807_1000463


Overview

Basic Information
Taxon OID3300017926 Open in IMG/M
Scaffold IDGa0187807_1000463 Open in IMG/M
Source Dataset NameWetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12784
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (69.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion.

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)35.9061Long. (o)-76.1569Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000487Metagenome / Metatranscriptome1086Y
F010285Metagenome / Metatranscriptome306Y
F059577Metagenome / Metatranscriptome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0187807_100046311F010285GGAMDGLTPASADDLPPLGELVADDPFWQYPAGVAREGVAHLRVWVTATDPPRQVAAVTETGHAGTVTESAVHIRAVLADRYGPGLVLLEHHLGRELGEGVETLDLVRIGADGEPHWARVWPTPEDNPRHAGLELWMAASGHRIVDQPASWFDFCEETDD
Ga0187807_100046314F059577AGGMRGRDNVATDQGPGGLEQESVAEAVVMGQGATDPVIELDERGIDLLKSWAHPCTEFRAAMQPDGSIVLHPMSAHDADLWRSGLVDEIIENFSRPERMIRLKADKL
Ga0187807_100046319F000487N/AVTAIGPRDVPPHAGQVVRRVLLRRNIVIDAETAQLVAAAVQAALRAGVPSRPRRRGSRVPAADCEPLF
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