NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0187856_1002937

Scaffold Ga0187856_1002937


Overview

Basic Information
Taxon OID3300017925 Open in IMG/M
Scaffold IDGa0187856_1002937 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12178
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (63.16%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008989Metagenome / Metatranscriptome324N
F042692Metagenome / Metatranscriptome157Y
F064454Metagenome / Metatranscriptome128N

Sequences

Protein IDFamilyRBSSequence
Ga0187856_100293710F064454AGGAGGMNLVEDLEKLLFEEIPEMETPGIKRCEWCKQPLPNDRYHLKICPQCRKESIDIFMKTH
Ga0187856_10029372F042692GAGMDLRRRIDGVDVIANDNEIWFLQDGRICWTTKEEVWSGSSRLGEMLRQKGYTVQSKRFPKKLRELILTISKPE
Ga0187856_10029379F008989GAGMANNAVLIRGLDRDTYNNVVAKAKQQGKNVAELVNEALVQYMNQSPSESPDVFDTKRLVIAGSVLLSKSDIMGLHKELGNFHLENSGELTFDKDVDREAFEKIDRIHNTGKLRVPTDVHHFALLKAGHVRGEVEKY
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.