NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181552_10062394

Scaffold Ga0181552_10062394


Overview

Basic Information
Taxon OID3300017824 Open in IMG/M
Scaffold IDGa0181552_10062394 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011501BT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2152
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001839Metagenome628Y
F021402Metagenome219N
F077486Metagenome / Metatranscriptome117N
F090862Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0181552_100623943F001839N/ALKTFEKFYSELLNNQVLTANEKVIYVICKSFVTAPRGCRISHQYLMARTGIKTRKSLIKALDRLTLFGMLARKQIDNSTCHYVFDKETMQQYIQHNQNKRRKISLSKKKSNPQINQQNTNVIHMVKKER
Ga0181552_100623944F090862AGGALTKYVDPKLVAKALARVTKSSNFHYSKAVEKIKKNRKQYYQNKETKTLQKSLSKDRFNTYLEELYKADVDN
Ga0181552_100623945F021402AGGAGMLTTNLTIDELDRFLQISSFCDSKMPKVKAKTLPTMYKVFENSIGIGDDADSIKYSDKHLARLKITLTSRQLSIYDFILILMLDVAAKDRELLYLRNFPQRKSLRQMKRMYLDWSHTKIGYEYNRSLINVCKIANKNLKKYLTS
Ga0181552_100623946F077486N/AMLNDLDSLLTESERNIMLKNSKTLTNPISMFKIDIVKVFKNKETLKDIFKCKKLQKKHKLQDFKSI
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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