| Basic Information | |
|---|---|
| Taxon OID | 3300017824 Open in IMG/M |
| Scaffold ID | Ga0181552_10000608 Open in IMG/M |
| Source Dataset Name | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011501BT metaG (megahit assembly) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 27410 |
| Total Scaffold Genes | 59 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 43 (72.88%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 31.972 | Long. (o) | -81.028 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F040641 | Metagenome / Metatranscriptome | 161 | Y |
| F057281 | Metagenome / Metatranscriptome | 136 | N |
| F099985 | Metagenome / Metatranscriptome | 103 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0181552_1000060822 | F057281 | N/A | MRAFELLESRGVTARAPGETYVSDTDPSDILTIQDITVLPAEGDSYEDMDQMMQAVDSAIPDTNTRIDDNKPNSGTKAAILATVSDKDGKGQTHVRYIRAIPPQGVHTMWKTLNGYKFSKGAEQESIPIKPSDLVPDENYRSATELAQQIKTGSKDLGELGEVMEMAVDQALAGTNQPIPGGDKYYNVLQKYGGEYLGPIALMSKPNSVTGDTAKMMQQFGLNNFAGSRVMFPQDTAMELIDSVIMTQDGRSIQISSKISTSGGAASSLSGVYKQMTPEIEQRFPEGAKIIELLATESSVNGPLKVARMFNIIDDSDIQAMANLDKRTQNIGDLQSERLQQMTQQQGVANGTQERPDYRVFWHTLTAVMNAVIPVVNANENFKNAMLEVLNNNEYVQLVTKAVKQGDAVSMQYYTKFPAVFKGAPQLVNKTYFATGQKGRIGFKLK |
| Ga0181552_1000060830 | F099985 | AGGA | MSHSVEQFYHKAKVLHEKAIALHRERYRVQGTYDAHACQVMLDDLRALAFDIQHGMIDFDIDFGKGSNPQ |
| Ga0181552_1000060858 | F040641 | AGGAG | MTEIQQSVPANYYGHPNVYPNSEHIKPPMEKERIRVVEQATRAEVKLAQTKAIEERYQEIQALRDQAKLRYETGSTTTVGEFIDIEV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |