Scaffold Ga0181552_10000019

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0181552_10000019

Scaffold Ga0181552_10000019

Overview

Basic Information
Taxon OID	3300017824 Open in IMG/M
Scaffold ID	Ga0181552_10000019 Open in IMG/M
Source Dataset Name	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011501BT metaG (megahit assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	100526
Total Scaffold Genes	119 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (9.24%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Algavirales → Phycodnaviridae → Prasinovirus → unclassified Prasinovirus → Bathycoccus sp. RCC1105 virus BpV	(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	31.972	Long. (^o)	-81.028	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F017731	Metagenome	239	N
F105506	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181552_1000001971	F017731	N/A	MKNNSMLRPPLSSIIFSRPNTSRRVCTNVVSVEKESTRLQCIETTIERTRGRCSLAYGRQEKAYIKVLNQLEKERLEILKYTQEKSYDNTDDSCTE
Ga0181552_1000001979	F105506	N/A	MILILIMCCCLLSIVIAGAYFYKNRGEFTAEITPMNLIETYNPAEASGRSGAVNVDDYTALSKNVDVGIKFENTEDGLDLDEIIARRYIGDEKKQEKTIKKTDEPKMFKKNAVSKIVFSGIDSEGINAVGDNKVRLFYKQKLTGVEMELTPKDIAAIPVTEEELTETLGLQEKKVTLLEPTLSKDDDKKAEITSEFLNKGYYMFFDGAGKIEDLVTGLDDDTRVTIIPATQGGDNSKFKIKIKGGDSGNDKFFAYTDTDVTLPREVGLSEDSTKSIVWELLESSKPDYIRLSPTGTNDEGEEFLMYDMRDDGNRKLVVENIVNMTGLEYKCNYQSMDILLSEDEILDTYTKCSLN

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