Scaffold Ga0181552

Basic Information
Taxon OID	3300017824 Open in IMG/M
Scaffold ID	Ga0181552_10000007 Open in IMG/M
Source Dataset Name	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011501BT metaG (megahit assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011501BT metaG (megahit assembly)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	167003
Total Scaffold Genes	199 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	152 (76.38%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

167003

Total Scaffold Genes

199 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

152 (76.38%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	31.972	Long. (^o)	-81.028	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

31.972

Long. (^o)

-81.028

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F018721	Metagenome / Metatranscriptome	233	N
F049641	Metagenome	146	N
F053628	Metagenome	141	Y
F053908	Metagenome	140	N
F073568	Metagenome	120	N
F095568	Metagenome / Metatranscriptome	105	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0181552_10000007146	F053908	AGGA	MKHFKLLVAVGFLSAIVGCAPFESPVKAQGSQTFKPGFTIDYTDCGEISSPDGANSMQFGKPDESCGGRVVSDQGYKNITQIRFTADLSSANGNFVTSTFYMVNNPTNPSLQPIHDNYCDAGGNKAEWNCQEVDFFEVNKNVFFQHTMHIGDGSVNAPQNFQFSYSTTEDQCFVNLAEGTGIVSWNGIDIKQPVDFVVDLDENGMTVTIKQGSISTVVYQMGEGFSGSTTFDSDQIARWQEGRAQGYWLNLSRWQDDKGQPPWSPGAPQGFYNWSCPWGSVCGATDSYFKVYNIEVDAEDTI
Ga0181552_10000007181	F018721	N/A	MYIMNNQGEGMYLIIDNTNQAIHREPNKKSYASTQYKTVGAAKAGITRTVKYYQKAYDQVAECVANGEPEYAAPLHNAYRDATEPQFNLTHKQFASSYTIVAVEDYVEPMITKTGICPGTGKKITVTEGINTPHYMSTLSESYWSA
Ga0181552_100000073	F049641	N/A	MSKDHLEPHRPANAGPEDKFIYESPDGGNTVYARPLGVHEMAQRKKVYENPEMLEEKKFYERWHMYRDILEVSKNNPALSKLLEQVEIVYNLSEDRK
Ga0181552_1000000743	F073568	AGCAGG	LNTVEVHLQFYELDGRWKGHDIFKWCCVTKTPPRYERFHPRPLAHTDLSSIINFNKVRDWCWDTWGPSCDMKDYDRVHELSNFMSLAQYNDSTYDTLNENWCWSNEEDHKQRRIYLAGDEERVWLETRWQ
Ga0181552_1000000762	F053628	GAG	LNLKISHLVVNGCSYTYGHGIADPINDCWASIIAKRLGVPLVNLALPGQGNQAVFRRTMQYFYKDLLHDNNPFYIHAYTQSSRRECYLADAYAGAPPHHFHIVDGYGTHSQLEKEIILNSDDHYYCLMEQDKLHRWTSINSLLDTNNIPHLMSDYMPNTSAVVQDFIERYETILINELELHSGKLRNFNEVTQDFDKTPCLHETVEGHKHLADYVWKEIEKRYDEIEVIDCNHAKLHDILIHTPETEKDVQYNHTNTINFYPLEFCRNVYYFHELGLDYLNKNWAGKPETDHMRP
Ga0181552_1000000766	F095568	GAGG	MAQSNAQKQLQQYDTDIAVLKVEFKNLDEKFDTALNDVKHDIKECETLIKEGTASTHKLLTDFQKSNQESHDNMAQKITALERWRWMLIGAGMVAGTLGYSVIEFWMSH

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181552_10000007

Overview

Ecosystem & Geography

Associated Families

Sequences