| Basic Information | |
|---|---|
| Taxon OID | 3300017788 Open in IMG/M |
| Scaffold ID | Ga0169931_10246657 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20L |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1463 |
| Total Scaffold Genes | 3 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Rwanda: Western Province | |||||||
| Coordinates | Lat. (o) | -1.78 | Long. (o) | 29.2 | Alt. (m) | Depth (m) | 15 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000785 | Metagenome / Metatranscriptome | 891 | Y |
| F009005 | Metagenome / Metatranscriptome | 324 | Y |
| F082161 | Metagenome | 113 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0169931_102466571 | F009005 | GGA | MLSEQEMIETATLLGQDEELLSYAKQIQRQLSGDGDIADWLDCLEMAYNELILNKFH |
| Ga0169931_102466572 | F082161 | N/A | VHTNEGPKERRKPGPGKRVSPGEQVASNKAMHCNMQLFENPQGEYYPVVDRMEQPTLVRGEYHPIGNSFHYPKQWGRKYAATYLLEHKIKVQQDILATAEGELSKLQRCLDSIKDWSDSD |
| Ga0169931_102466573 | F000785 | N/A | MRVSNKTKGMRFDCNRLWNWAHDKLGESKCEAIAFYWDMDEDSECGYYDWDKTIWINLAQCKRMISVQKTILHEWTHAQQTFRWYNHYQIKYGYKNNPYEIQARENEKLVKRAYKRRSKR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |