| Basic Information | |
|---|---|
| Taxon OID | 3300017788 Open in IMG/M |
| Scaffold ID | Ga0169931_10178106 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20L |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1854 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (42.86%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Rwanda: Western Province | |||||||
| Coordinates | Lat. (o) | -1.78 | Long. (o) | 29.2 | Alt. (m) | Depth (m) | 15 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001272 | Metagenome / Metatranscriptome | 733 | Y |
| F002843 | Metagenome / Metatranscriptome | 526 | Y |
| F035672 | Metagenome / Metatranscriptome | 171 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0169931_101781063 | F002843 | N/A | MIDPTPTVQVQVNANNSLFVTTGVDYDNDGKVVGSEITEQYTLNPGDSLEGQPPEVVKIANALWTPAVVAAYQAAVEAAKPVVANDEPVAP |
| Ga0169931_101781064 | F001272 | GAG | MIKIELTEQQVNSLLQLIDIAIKAGGYANAKVAVPLADIILDAANAQKTQ |
| Ga0169931_101781065 | F035672 | AGTAG | MNHYDTIRDLSIGIGGPAGGLLVAGIVSDPVIANISVTLGSLAALTVIIRNVLEIWKNRN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |