NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0169931_10095966

Scaffold Ga0169931_10095966


Overview

Basic Information
Taxon OID3300017788 Open in IMG/M
Scaffold IDGa0169931_10095966 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20L
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2871
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (58.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameRwanda: Western Province
CoordinatesLat. (o)-1.78Long. (o)29.2Alt. (m)Depth (m)15
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007570Metagenome348Y
F029676Metagenome187Y
F050211Metagenome145N
F050215Metagenome / Metatranscriptome145N

Sequences

Protein IDFamilyRBSSequence
Ga0169931_100959663F050215N/AMGTLQLVKEIKTKSDSDFRAVTELNALTNKADKKYVKDILTKLKDTFTKKKIKYLIGEFSGGHDEGGFDSVYFADDKGEAITIPEEEKISFMKRVDVDNIYTFENAKQNKTTFYSTTTDKRVDVLEELEDILYKSGCLEEYGSFAGEFDVNGTVKLDVFTYKWQMDGNQSIEQCESISEWGEL
Ga0169931_100959667F007570GGAGGMNEDITYIKKYIKTFNDRRLREEYNLYTSLERPTILENYFKDFIKKEIETRGIRVXLNIK
Ga0169931_100959668F050211AGGGGGMTKYKNINVYNVYFCLQDDDGNILEHKNGKPKLFRYKDEIDKPFDYIQTITEDTTLEMLKEVA
Ga0169931_100959669F029676AGGAGGMGHINKTFFSYMTTQDAWDEYLGLLKDDETFADIWKDTEQDFEEWCEAHEIVLVDTQEKANQLEEAQLE
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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