NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0169931_10035957

Scaffold Ga0169931_10035957


Overview

Basic Information
Taxon OID3300017788 Open in IMG/M
Scaffold IDGa0169931_10035957 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20L
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5701
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (45.45%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameRwanda: Western Province
CoordinatesLat. (o)-1.78Long. (o)29.2Alt. (m)Depth (m)15
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037565Metagenome / Metatranscriptome167Y
F073148Metagenome / Metatranscriptome120N
F078205Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0169931_100359575F037565N/AMNTDTKIMTIDKIYEQILESYFRGELTEGEWMMSPDQVVRVFETECLKHGHSPADYTLYNESLADECECHVDKLRTKFI
Ga0169931_100359576F078205GGAMDIISIVTGILSWLQVSMGQASITAGTIYQGAVVVDKVTTEDFKGTWSAELQEQGIQIIRGFVVMTDGYDHDNAKD
Ga0169931_100359579F073148N/AMKISAMVMILLLITTSTTRAEITARDVWVGLLIASKVIAKTQSGTWSASIHEEVHQGVKDAIRKAGQE
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