NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0169931_10025179

Scaffold Ga0169931_10025179


Overview

Basic Information
Taxon OID3300017788 Open in IMG/M
Scaffold IDGa0169931_10025179 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20L
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7329
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (43.75%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameRwanda: Western Province
CoordinatesLat. (o)-1.78Long. (o)29.2Alt. (m)Depth (m)15
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001656Metagenome / Metatranscriptome656Y
F003612Metagenome477Y
F004235Metagenome / Metatranscriptome447Y

Sequences

Protein IDFamilyRBSSequence
Ga0169931_100251796F003612N/AMPIEPKNFKVTNAIGSTDNFAGAEVQFFHITIVQSDSSVLDLRSELDFNETMHNLIRTILERGTILYQRIDNAATGRIDITMERSGWTAATLQSAIRALGDTVGVNSRSVSLSVVSQTELKLDNS
Ga0169931_100251797F004235GGAGVAFNREKKEKKMPITPNRTVTPLIGEIRNIGKDVTMISVDWDVDADASREAMEAISNTILVRANILAAGAVYDTGTKQDFLLEGDYTSTLTTFKSLDGTVTGTLAQVLTEDIINLGTVDGINFASGVVAVTLKTTFKYA
Ga0169931_100251799F001656AGGAGMPITQNRSTDLTRRQAFNGKGLTFVEVIFDNALTATATTPEAVDSAFDKVTKVVNRNGTLLAANYRLGAKATDYDATQVAAINADDSIDVYQYIVEGTPGQFNAADSAGDTNIDVDATVIADAEADIEADILDVLDIDDSAGNVHVEVRTLLPEGSVNATSSAIIGMFDQRGAA
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