NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0169931_10002902

Scaffold Ga0169931_10002902


Overview

Basic Information
Taxon OID3300017788 Open in IMG/M
Scaffold IDGa0169931_10002902 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20L
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)27614
Total Scaffold Genes57 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (40.35%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameRwanda: Western Province
CoordinatesLat. (o)-1.78Long. (o)29.2Alt. (m)Depth (m)15
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010762Metagenome299Y
F025689Metagenome200Y
F030056Metagenome / Metatranscriptome186Y
F036202Metagenome / Metatranscriptome170N
F041151Metagenome160Y

Sequences

Protein IDFamilyRBSSequence
Ga0169931_1000290212F025689N/AMEAKFHGAANANMLRQLHAAKDWNALLEYGLLLAESEASQRSTIKWLVAEAMRSCSVQDWHIQAAKELLAGRD
Ga0169931_1000290215F010762AGGMNELTIKAAFEDWWRESYGIAPGTHAVMTHVAFAAHMLDLMELMQDAERPPA
Ga0169931_1000290225F041151N/AMRTMTTPITTAQDLINALIEVKQQKEELEQKEAFLKEQLQGAIAFGELKDYQQEDGIFQFPNAKYIRCERNSYKYSKDAERAMRTIKEQDIDAGLATRNVTTYYQLRTMD
Ga0169931_1000290235F036202N/AMSLKLFDYENRGRYVHQVYDNKQRLSTQSVYRLAGSGNFAETELGDPRFHYSPVSGDHAIGKYDEDGHYCTYLPPIPRPGSKEPVGRYVRHPWAEEERRRQGAMEA
Ga0169931_100029029F030056N/AMRQYVLEIEYTIVVESEEDGREAVSDNFVARLTELAPSNDHILGLAVQVLPIPELRGPSD
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