NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0169931_10000127

Scaffold Ga0169931_10000127


Overview

Basic Information
Taxon OID3300017788 Open in IMG/M
Scaffold IDGa0169931_10000127 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20L
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)115983
Total Scaffold Genes137 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)125 (91.24%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameRwanda: Western Province
CoordinatesLat. (o)-1.78Long. (o)29.2Alt. (m)Depth (m)15
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046955Metagenome / Metatranscriptome150Y
F078535Metagenome116Y
F099078Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0169931_1000012724F078535AGGMTNSLVKFTSHKDGNGRGQLYWERADIDGLPFRGQQPPLLRNEEYEERVVRVADPKNGTFYTGDPEQNAVYLKIMDGIANSWYQLVFIERWRIDGDKFHHIYVEWLEYFLEDGKPTPYTPNL
Ga0169931_100001274F099078AGGAGMSMDTSCLYSTVKNVSGTAKTFGFLPPHGRTLANNEEFTVFGDIRQNLGGNQGGERSVQRRANAAFEAAVESGDLEILNTPSPILQDTVTDAPKMLQLASGSLSTVDPCWYNSES
Ga0169931_100001278F046955AGGAGGMPAPRQMTANTLNALKGWPQMNAVDYHAAFDSAIPSGDLPVLAGSVVSLNPSGNFILGVGNSAVMPMFLFNNSDDPDVVNDGGDASTTPGVWIPISPTGQAMALVAVGAYELVSTAFVAASYPPNTPLTANKSGSANPGKLRAGTLYTNMIVGIVSRGVVDNGYGKSALAFWPFPVFPN
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