NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0183260_10014513

Scaffold Ga0183260_10014513


Overview

Basic Information
Taxon OID3300017787 Open in IMG/M
Scaffold IDGa0183260_10014513 Open in IMG/M
Source Dataset NamePolar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ497 (22.06) (version 2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6051
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand → Polar Desert Microbial Communities From Antarctic Dry Valleys

Source Dataset Sampling Location
Location NameAntarctica: Dry Valley
CoordinatesLat. (o)-78.0827Long. (o)164.1679Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F055429Metagenome138Y
F057149Metagenome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0183260_100145135F055429GAGGMSLQRLVLDFRSDEIVVRVLYRSQDGPNPGTKARAREVSRLARSGLQDALEALDGGAECVGTSGFSTREDILLATTPPDTAKPVHAKLKGAR
Ga0183260_100145138F057149AGGMCWLHDPSRAEERHRHASRAARSKPSRELAGLKEEIKAVIAGVRGGDLFRNDAAVMIQGYRALKDFIALERQIKETESLEARIEELERGQEAGRWRQSKGA

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