Scaffold Ga0181355

Basic Information
Taxon OID	3300017785 Open in IMG/M
Scaffold ID	Ga0181355_1000019 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.D.N
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300017785 Open in IMG/M

Scaffold ID

Ga0181355_1000019 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.D.N

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	50705
Total Scaffold Genes	71 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	25 (35.21%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

50705

Total Scaffold Genes

71 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

25 (35.21%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: Michigan
Coordinates	Lat. (^o)	43.1881	Long. (^o)	-86.344	Alt. (m)	Depth (m)	15
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Michigan

Coordinates

Lat. (^o)

43.1881

Long. (^o)

-86.344

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F023326	Metagenome	210	Y
F025268	Metagenome / Metatranscriptome	202	N
F074792	Metagenome	119	N
F095370	Metagenome	105	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0181355_100001918	F025268	N/A	MASEQLYFNSCAEIDSFFREGREYFNDLYVKKLVTNSTYFTRFEEQAWPLNHTTEQKGFRFGRGFYDPCSPFRKIVDTYCNTDSCDSKPEVIQRPGTESYTFELLRKEMTTDWICVESLLYRLFPAEEILQFEESNARITKNVHEEFLRANYIGGAGHKWLGIVNDDGVYCGLLDDAAWYIPEHTTNNESGYDLCHIRVKVAAADLNKIAYLSLDMLDDALVELQNEDDAFRLDLSEAAGMPLLDIVIPDPRVGRGLYFQAKRNNGYWDANTDFDSRLTSLKLGVNRIIGDYGFGYDINSLRFNADSAFNATLPPFSAGDASTWPRLVRVPRYVKVAQENGCSYVPNRDYQNADFAISAAMVNKAMTKWTMPSSTGYGQAQQMTQNYAGDWEWKNPDWECNRWRKSGFYQAQFRLAAQVKDPTLIHVFLHRMPKARNLYGSCCELNTYTACSTNPDCYSCEGVGDIVAPTP
Ga0181355_100001924	F023326	GGA	MVFPENMNPLEIELYCYALTRGDYGRTMRVKKNMELSDYKLLSPYEHFIMAVQYMWPTDVVIKNRGYTNTQLLRTLEELCNNDDVCLAGAASMGKSFPVGLWIYLDWCAAPHCTSSWVATTTLGASEDRIWGIISKLWKCASNKIGNLVDYRHMIVWGGADGGDEKDYRNAIKAIAFPPGSEGQKAIDTTRGRKNDRIRVALDELPEMEMGAINIRQNLSSNDDKVFIGIGNPSAGDNPHTRWAMPKGHTSFDAVSADMEKWETETGVCLFYNGMKSPNFQAPPNEPSPFPFLMDRKKQADILKMSYGDENSVDYVRNAIGWWPKSGFAQTILTADVIRNADTYSEPIWDHNELIKIAGFDTAFTAGGDRCVLTICKLGYVRGTSQKVMYLENQEVIQIAAGQATEFDVQVAAKVVDLCRKYDVKPSKFGMDVSGDGGRIGQAIMREWLRHDKDGSSIALISSMGRPTDRIAADVDKRACTEVYDRLISEYWYSAFHGFKARVIYGVEASGELGRELCLRRYRTKNKKISVETKDDYKARTGFSPDLADSFLYALEMSRRNGLAFIGNDKPVPTDRFWARREAEVKPMSDDEYYMSDDDGED
Ga0181355_100001928	F074792	N/A	MDNHKDNIDLDMKAFQFMDFARKSVLITNMSLAEAMGEGIFSTLETFSGNGGYLVLGVRPNSTARAATYSGKRILWSELALIKDEDLELHHKLHAVDCPDEHISDLAWTDLVDQVEEWVKCEREEIDLDYR
Ga0181355_100001960	F095370	N/A	MSNQLDGIEQKDVIKRVTGKITKLWEARTFNGPKGEFTKQGGEIEIDGTSYGLAFWNNNQSDSLKGKVVTLSSVRSKHGLSGVTLDHESYDGKNGKVDRDVIRVTASAKIEIGEHSEEPPRVASSATPSQTQIGDPKKAIDSIVEMHIYIDGLVRHAYAGRASDEETLRSYVASVFIEANRKGIVMASVPTEPSVPVCDPKNWGSAIVPSGSRKGEKLAEIGKKDLTKLYQFYLEKGFTTPFAKCVEQAGIDFNLDGPLEEQDDIPWE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181355_1000019

Overview

Ecosystem & Geography

Associated Families

Sequences