NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181380_1047156

Scaffold Ga0181380_1047156


Overview

Basic Information
Taxon OID3300017782 Open in IMG/M
Scaffold IDGa0181380_1047156 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 3 SPOT_SRF_2009-08-19
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1550
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000302Metagenome / Metatranscriptome1337Y
F007531Metagenome / Metatranscriptome349Y
F034715Metagenome / Metatranscriptome174Y

Sequences

Protein IDFamilyRBSSequence
Ga0181380_10471563F007531AGGAGMDTINTKKILDFTKLTGLTERITMSHGTLYVTLLQPERCDFFHEIIRTFYKDNINTDGGVNMYAVGDEFAFDFVPQDREAPVFSDEDYSGKEDMMPSDVDKGIWSEFAEEELLNNIPADVDTMLDLEADAKEGR
Ga0181380_10471564F000302AGGAGMIRTMTQDKKDRIADLERQKIDLENQLETLGYSGNLVRMHQIEEEIYEIEDTIRKLLP
Ga0181380_10471566F034715N/AKDWYCGDCEHGPMMDNDTNCSRCGAKHSSHHEEEMTGWEDEDIESEVEEIW
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