NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181380_1046294

Scaffold Ga0181380_1046294


Overview

Basic Information
Taxon OID3300017782 Open in IMG/M
Scaffold IDGa0181380_1046294 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 3 SPOT_SRF_2009-08-19
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1567
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003051Metagenome / Metatranscriptome510Y
F011192Metagenome / Metatranscriptome294Y
F067760Metagenome / Metatranscriptome125N

Sequences

Protein IDFamilyRBSSequence
Ga0181380_10462942F067760N/AMRVRRIDMFIMRKYGDYCDESLRYNDIQKTFKAWKEDNIISLVKEYKNYRRLDRYGSQV
Ga0181380_10462945F003051N/AMKTKILKSKVVIDMSVSEYDTLFKYIGKLESMLNTLHETNDLWLSDVHNLSSLKWELTQLLDAEWNPDTYRYVKRGSKX
Ga0181380_10462947F011192GAGGMTAKEMTDNNFINFQDDFYNLLEKYGVDKIDIEHPQFNSICNLRNKVVEFIEQETWSN
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