NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181423_1043289

Scaffold Ga0181423_1043289


Overview

Basic Information
Taxon OID3300017781 Open in IMG/M
Scaffold IDGa0181423_1043289 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 46 SPOT_SRF_2013-08-14
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1808
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Bacteriovoracales → Halobacteriovoraceae → unclassified Halobacteriovoraceae → Halobacteriovoraceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F059124Metagenome134Y
F072426Metagenome121Y
F073751Metagenome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0181423_10432892F072426N/AMNTKPKLVDPNWFVKPKPKSIKKVIPTNIDNSLIINIIGLCILLIGGLCIYQRFLDREKTELETKHKIIELNEYVKRNINL
Ga0181423_10432893F059124N/AMNFDSNLILAILIYLGSCYALYNYKHSKMFDESGNFKSFGLGKDETVFPYWLVTTLIGLSSYYFLIIRGDNLL
Ga0181423_10432895F073751N/AVQTNIKWNLTHEKCFEIIHLTLIDILSESKDNIRNINDLILMLNSRTRVYKLHNCRKYNSFSKYLKIEYDGFLNFIESYNFYGVVKTDKDISIKLYKNLVNLDDLKYTGKRLTKDSEWIFIDDLGDEL
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