NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181346_1001800

Scaffold Ga0181346_1001800


Overview

Basic Information
Taxon OID3300017780 Open in IMG/M
Scaffold IDGa0181346_1001800 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.D.N
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9525
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)15
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000934Metagenome / Metatranscriptome828Y
F002085Metagenome / Metatranscriptome595Y
F083714Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0181346_10018005F002085AGAAGMADNIIPLQNTNNMRMADFVRVTTASATYRFATTANVLTIPAVDALPFDALGSLVKVGDIQRDIKSTANETSITLVGLDTALLGWVLGHDIKGSLIEMWHGFFNDQNELITTGGTGGLYKFFTGYISSFQISEQYMEEAKSYVGIISASASSIQIILQNRTAGRYTNDNAWQYWNNGDTSMNRVNFIETINYAFGKET
Ga0181346_10018006F000934GAGMSTLNQVLAISESIGINDHRFIGQVLSRNQRISTSEIITVQPFMFDMKPMNYLLYSQNRSLLSTLRAADRQYEQYLNFGSTGWWNYIAYQGDMSSAQISACQYQTSSANKTIVLGSLPSISSTAYIVKTGDFLQINRYAYIATADVQRGAGSTVNIPVHRTIMTTLTSAMTAVIGQYGITQSLGGLTYIGVTFPVILQDYPTYTFVPMTNDSFIAWSGTFKAIEAVL
Ga0181346_10018008F083714N/ASLRTQVRASMVFNGHTIQDIDALDEATMKEITVMYEGELVGNRSLLNMQGTLVAGVFNYLRASNSQPYTLKSVLGSAYEYFYGIEKADPSESLLTFMSQAPDFKMDRFQGK
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