NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0181394_1001535

Scaffold Ga0181394_1001535


Overview

Basic Information
Taxon OID3300017776 Open in IMG/M
Scaffold IDGa0181394_1001535 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 17 SPOT_SRF_2010-11-23
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9898
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Varidnaviria → Bamfordvirae → Preplasmiviricota → Maveriviricetes → Priklausovirales → Lavidaviridae → unclassified Lavidaviridae → Organic Lake virophage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F067635Metagenome125N
F071127Metagenome / Metatranscriptome122N
F093701Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0181394_100153511F071127N/AMYMDEMMQYTANELKKIIREQMPNLRNFNKKRKELLIDIITSNNLDTSSLKPVTKKEIEQPKFSMRFGKFSPFANDLND
Ga0181394_10015352F067635N/AMVKQTIYIDNYSSDNSDIITTSAQTIRININGMLNDLPPYAMLSLKQLEFVSDVDLAAGLVMVFKGAVSNQMNINKGDPVLAICPFDYVKGTNYHHKAPEYGCPLMIAGNIQQIEFGFVNVNNIPISLADKLYGILLEIETPDVGEPVSEYRRAIPL
Ga0181394_10015356F093701N/AMAYSNFNSPQLAAPQPHAFIAPGKFLDIDEKFYKQKEEVHPRSEEGFGRMGRPIQPYGTNVNYHATEFVPKAQGLTSQDLKVNYLSYLYNQKTGFDSAHPR
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.