| Basic Information | |
|---|---|
| Taxon OID | 3300017774 Open in IMG/M |
| Scaffold ID | Ga0181358_1006726 Open in IMG/M |
| Source Dataset Name | Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.D |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4868 |
| Total Scaffold Genes | 6 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Michigan | |||||||
| Coordinates | Lat. (o) | 43.1998 | Long. (o) | -86.5698 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001299 | Metagenome / Metatranscriptome | 727 | Y |
| F015202 | Metagenome / Metatranscriptome | 256 | Y |
| F081036 | Metagenome | 114 | Y |
| F085210 | Metagenome | 111 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0181358_10067261 | F085210 | GGA | MSFQIPTADSLVTFLQDFTGSTNDSEIKQCIFLAELSMRNIELPALRSDPYADENIGVADAYGRVDIPADMNKPILFFNQNGATPTQTGPWLVYDRIGDRDIITQSMIAALYLSPVNVPAVIRGKFSEVYNQYQFLPYIGEGALINLYYYKAWPLLFSPVDDTVISTTGTVGSIAGAGPFTATITGMS |
| Ga0181358_10067262 | F001299 | GGA | LKRPSGAFSCELIQVLYPAAKYKMSLDQNQPEYLDNTDPEKNLDYWRQDHGGTVTTHNGVADSLLKNDQLYRSMKGDWSRSAWNASQNIRTTTGREDGKFYIKREQMNAEAVARRCQEYRKAAEAGHPDPLAPIGDDGKLTYKWMDLPNVVSIRISDQYFGGMPWAAIKHDRMLKAQFYRVVEREYNQYVCYPNGRLPIPVDVPYPTKVGEQRFFKGH |
| Ga0181358_10067265 | F081036 | GGA | MIDTETVESFNTRLTVDTTNISRLTPSQRDSIKHYGSQAEALLKNRDLAMFVHHYKFELADGLANITGHSDTDNLTRIALSNYLSGIDGFVTSLKRAIYQRNKIQKSEQQPSADNTPN |
| Ga0181358_10067266 | F015202 | N/A | FDPAKDIYQLPPPSGNLQFLEVAMNRIQQDTMAMVGMTTPQDVFNPEVMAPGNSGIKLQMALTPNQIIQDNTVRNAADGLKEAIWLVWRTLIQYGDDYGVKKLAAKYHPDKKPVFLDYQAWDDMNFCDRKHIQIELALGMQSQENALGRLQIIQQAQTQLYTIVQGMVANGTLTKEVYHKVKKPFADTLYVLGVKSSDTYLPSDEEIMAMIEQGKAAAQSKEPSAEDKKRLADAGLAQAKTEQIKAEMEGSDAESQLDFMAVAAGDPKVYQ |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |