NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181430_1075361

Scaffold Ga0181430_1075361


Overview

Basic Information
Taxon OID3300017772 Open in IMG/M
Scaffold IDGa0181430_1075361 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 53 SPOT_SRF_2014-04-10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1022
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006939Metagenome / Metatranscriptome361N
F039144Metagenome / Metatranscriptome164N
F070007Metagenome / Metatranscriptome123N

Sequences

Protein IDFamilyRBSSequence
Ga0181430_10753611F039144N/AEFYKTFEEMHGDNDTICATCQEGQEEWEYINSEEEE
Ga0181430_10753615F006939AGGAGMPLDKRMVTNVIADNLNGFITVKFLTKTDEERVYNGRMNVQKGLKGNERGRIAAEALRGNGYVTLKTSEGYKCFNLDKVLAMKVGGRHIFCMGAEL
Ga0181430_10753616F070007GGAGMNQDLERELRMLGIMIPTEDEMEVEEDFIVAQLRSETRALHLSKDWYNDPR
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