NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181430_1018755

Scaffold Ga0181430_1018755


Overview

Basic Information
Taxon OID3300017772 Open in IMG/M
Scaffold IDGa0181430_1018755 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 53 SPOT_SRF_2014-04-10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2290
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F064200Metagenome129N
F069447Metagenome / Metatranscriptome124N

Sequences

Protein IDFamilyRBSSequence
Ga0181430_10187553F069447GGAGMKEFYSKICKKLKIGFGPNHVVANNGVTALSRWGFWSPFFTVLVSRVHPIDHDKMFNNTRIDARVIYHSHETNFLSLIVKGKYTEERNVDGKIVVKERKWFNYVKRDTFHRIKCDDYAWSVQAGFTRDEKVKVKINNKIYPHRRLFTMGGRSDGTLG
Ga0181430_10187554F064200N/AMIYLHRVIVEDSEMTWKIYWFNPGILSHRRHIKKIQDEIYKVFPNETYSWADPAHQCFGYHLKDNIIVTNVCGSNDENLHVNKRYVELKDQNEIYYNKDFVCFYYDLDNKKKWSEVYYKRDDNPEVITKTKLDEGLNIEWISEYYNDEFEKTGQNLFITGKCEDIYKWIDKQNVDIPKPFKNPIEMDMDDRPIVDNINTENAIKCEYDTEGNLVKLKFFGCVLRTKMKVEGKFSHLELSCGYISSINNKEQTEIVESNYDDYGNRVPSTIIKRIDDYIFFPKARENGEYERVLLKDM
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