NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181430_1004058

Scaffold Ga0181430_1004058


Overview

Basic Information
Taxon OID3300017772 Open in IMG/M
Scaffold IDGa0181430_1004058 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 53 SPOT_SRF_2014-04-10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5487
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (76.92%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043965Metagenome / Metatranscriptome155Y
F090413Metagenome / Metatranscriptome108N

Sequences

Protein IDFamilyRBSSequence
Ga0181430_10040581F043965AGGAGMAVSGKVYSKSDFSVGIINKNATAFETAAANDAAYELLPVINVSAPVLNLVESGEIRSNNAGMLELDIDQFRTTKGGFITMDFEVPAERDMLVRMLANVLQDHGESGSGPYVHTIQATSSAALARPDFTGSSTAGVPSIFDIGLYYPESAQDKMLTSAVIQSLTMNFDMADGRCLLSGTFYSGFTSSSKFLVEQTLSANSAAPTLMSTSPTQIESYFDVKKLDVD
Ga0181430_10040582F090413GAGGMKYKHIKGLQLQKPSYLNTPNQKIRELLAGKEVELGKENLEEFESLGVQVQPIKKQKPKKKEEK
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