NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181430_1000251

Scaffold Ga0181430_1000251


Overview

Basic Information
Taxon OID3300017772 Open in IMG/M
Scaffold IDGa0181430_1000251 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 53 SPOT_SRF_2014-04-10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23796
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (8.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010105Metagenome / Metatranscriptome308Y
F046389Metagenome / Metatranscriptome151Y

Sequences

Protein IDFamilyRBSSequence
Ga0181430_10002511F046389N/AGQIQNFFYHKVNEQDPSTILELSNDSAFPSLYPLINEIGIDYKDFYTFSSNWEPSYFIKSIDKTLIEPIIGTRSMKERKSFFGSKYLKVPETIILETFQPDPFVKAAIKQPSLIQGTFMYQDIASVTVNKPVIKSAGTAQLNALKKKPSPPIVTFYLFIEKRLIEYLFEPIKKEFLKYVNPLYGFGDLETLDDDVRQYIRENILKLYKVEEINFYTLASRNKSSDTYTTAELTDLQKVTSGLTINENVSSKTLNTNPFDLRLIYNKRTGFSESYGFSVTIVKK
Ga0181430_100025119F010105N/AMDYLHTFESLNESKELDTIKKMVLDYAEKKGKSKWKDLQNLIVKHKGLDPNDRSNQGYFASYFSGGSNWMAKSGYDKNMGKHGRGQNSHGLLMRPTKEDPRYLEKTPDNKFYVVKIWDGKSKLA
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