NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181343_1007710

Scaffold Ga0181343_1007710


Overview

Basic Information
Taxon OID3300017766 Open in IMG/M
Scaffold IDGa0181343_1007710 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3577
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.2382Long. (o)-86.2805Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047005Metagenome150N
F093777Metagenome / Metatranscriptome106N
F095456Metagenome105N

Sequences

Protein IDFamilyRBSSequence
Ga0181343_10077102F093777AGGAGMAANFGAPDPTFAAQPASRPQGMATLLNLPSNAAWWYTHHPGHWQCVEGEWLPDLGQMVAIPGLNRVDKNGDTALAEVHLGKKGITIIPWEVEPGGYCIQYAGSNGPVFLSKWEKPKLVAGQVRMSVDTEGYRAFCRRLVADGTIKIPDPDFIGVIIERQERIVTEHQTRAPTHPGSALALPVESKRLEDMRAARERMYAAPKASKVKP
Ga0181343_10077105F047005GGTGGMASKTVRQLREDVTARILTLTGWKESRVAPDNFGRDADSIAHKAFAVHPTSTDDLRAYRGRPAEGLLVETTLEVRYSWRLTPKGMSDSYDDALDAEQSITNCLMVYDTAWPQSYKVQLMTATRESNTIGEWVIGVLTFRIVHTLPLQ
Ga0181343_10077107F095456GGAGGMEVKLGKFTGTLRKPASFMTAREVTMAVGQNALRGLGAALGVCWGGKPMKATLAACKWDMMAYGGAVVDELVTLGVPEADIYAAGREALDIVIGSLPREEEVATAEGFTDGPTGPSTP
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