NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181343_1006120

Scaffold Ga0181343_1006120


Overview

Basic Information
Taxon OID3300017766 Open in IMG/M
Scaffold IDGa0181343_1006120 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4097
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (58.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.2382Long. (o)-86.2805Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012434Metagenome280Y
F016936Metagenome / Metatranscriptome243Y
F024061Metagenome / Metatranscriptome207N
F029363Metagenome / Metatranscriptome188Y

Sequences

Protein IDFamilyRBSSequence
Ga0181343_100612010F012434GGAGGMSPTTALTRALVLALTAPDQERADRAIALAESIGAGCTPRQVATAKRNASKLTK
Ga0181343_10061203F024061N/AMNTGEIKNQAVINNATEQFRSLLETHFVAIARAAVESFMEEENQTEPKAKASFALEWDALSLAPKVVVKIGWSVRYKDETEAMVDPLQSKLGLVEDAK
Ga0181343_10061206F016936AGGMNLELIHAELVRIREALEARPFASGAPAAKPASPRSEEVPMPTEIIVDAGNVQVHFGKNKGVALSSLGDRSVAWYAQEPEPRIGNNGKPFPPRPEDVLLRNAARTIIHQKRGTLPSAAVPTTPAATSVNEEHVPF
Ga0181343_10061208F029363AGGAMENDDDNEMLWAAQDLRTMTSCKAEITISRRVTIKPNAIKESWDYQITFGDILNRGAWRWECAQAETLEAAMDITRAQITAQGDEKARELLQLQDAAAKLGLKLVEAAP
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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