NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181343_1001407

Scaffold Ga0181343_1001407


Overview

Basic Information
Taxon OID3300017766 Open in IMG/M
Scaffold IDGa0181343_1001407 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9690
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (47.06%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.2382Long. (o)-86.2805Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002867Metagenome / Metatranscriptome524Y
F004722Metagenome426Y
F006109Metagenome381Y
F017122Metagenome / Metatranscriptome242Y

Sequences

Protein IDFamilyRBSSequence
Ga0181343_10014072F004722GGAGMREIRAAKTADLQRAAAFLEWARDVRKGCSKQRGGARVAQSNAWRKRVDDDVRW
Ga0181343_10014074F006109AGTAGMTRYVVMVEDRWVTAVYGPGKGIGLTGAKEDASSWVTYERAVAAARVIAECTNSPVAVHSVDEPTYPRSWK
Ga0181343_10014075F017122N/AMEIVSFQEQQDPELRLGEGRSRTSAEKAWLFELKIWLPGQGAMRDLVRAESLQQAIEFAQNRYPNCKVEVPATAAKKPKLARAKNGPREAARRRLKLVEKKGESTNR
Ga0181343_10014079F002867N/AMSVVNTTDYGNGFSLDQLENERGELYYRACKNSICRYAEDHYIAMMYLEGMGWDPKQQAP
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