NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181343_1000342

Scaffold Ga0181343_1000342


Overview

Basic Information
Taxon OID3300017766 Open in IMG/M
Scaffold IDGa0181343_1000342 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21512
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (53.12%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.2382Long. (o)-86.2805Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000919Metagenome / Metatranscriptome834Y
F008358Metagenome / Metatranscriptome334Y
F017818Metagenome / Metatranscriptome238Y
F105033Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0181343_100034220F008358GAGMSTSYIYFIIFFCIAYLIITDQSVAKGFYMLTQLAQVQYEKVKWWIIYNPANPIVRYFMWRNSMRLAKELMDELAQKDKE
Ga0181343_100034221F105033GGAGMSRTYRNLEGINRCALRKPKTANERKTLIGLLQDNYAEEYEISGLNHLHHRLSNCPTANYDKVISGYYEQDYKI
Ga0181343_100034230F000919AGTAGGMRFRNIEFRWSKCNNKYELVKWYQSNGSGQENCYVIAFFDKDKEGYDMRTIGDRFFDDKDAWVVGKYGLEFLNAIFDIEEQEKDEV
Ga0181343_100034232F017818GAGMDKDAYYDWIAENDTYPKHSHKFFVALYTKYEGIEGYHRYLGPFETKEEAKVFAADYKDKYTKPGFISMTRIFAMCEVVKDT
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