NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181413_1040491

Scaffold Ga0181413_1040491


Overview

Basic Information
Taxon OID3300017765 Open in IMG/M
Scaffold IDGa0181413_1040491 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 36 SPOT_SRF_2012-09-28
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1453
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → unclassified viruses → Virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000613Metagenome / Metatranscriptome985Y
F003678Metagenome / Metatranscriptome474Y
F106095Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0181413_10404911F003678N/AAPLIIASIALFLCLYACVRVGQFINASKGLDWDAVANITGDLATTKKTIQTLNNRLNGMHSPKLADQELMLQLMQRQPNQQMNGTIKNVGG
Ga0181413_10404912F106095GGTGGMSFLSNFIKKAAPVVAAVAPGTPIGTAARVVTIAQQQQEAKYQKKLAIDAQAAQDRRINQMEFRDTDYLSSSTPRIMSQPSRTVNAGFGSGFGSFLSDVGSNIISPLSGIFSQVRPFISQQSVGQPALPTRSNLGGQESQSSGVTEGFVGGIPNVLGQAARFLRSPGGQIGTGLIGGIGASMLSGGSGGMRITRKMKSQYRAVLNLAQGDYDQAAAMIGVSTDMFIMVLLKRFRNDGPVVTKAALRKTKTTVRRLKSMCDMYDSLRPTATRRKAPMRRASTTLISNK
Ga0181413_10404913F000613AGGAGMPLVKKRLSIAAGATSDQVLSGTTYEYVDPGTRIVVAAAVDTVGSATADTTMDFNVNNAEFSKNASVSAIVTGEPFGWNGNYAMNDMVTTGQVRNRPVITF
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