NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181409_1039053

Scaffold Ga0181409_1039053


Overview

Basic Information
Taxon OID3300017758 Open in IMG/M
Scaffold IDGa0181409_1039053 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 32 SPOT_SRF_2012-05-30
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1484
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012581Metagenome279N
F021207Metagenome220Y
F029779Metagenome187Y

Sequences

Protein IDFamilyRBSSequence
Ga0181409_10390531F021207N/AKRFKQVNVQQFAILVQEIDISKYTQEEYVDVVEEIYMTIFRHNTDGDFVVPTMPNEEGTWKIHNKGQTIEQAMEIINERK
Ga0181409_10390533F012581AGGAGMSKYTLYAKKVYYYRKDINAQDRKSAEKRGADYEADDNAERLFESSGEEFYITSIEESDD
Ga0181409_10390534F029779AGGAGMSDKEKYEELCEALVGIDATERYTHEDILSYIHNLKNIEEKFYDNKN
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