| Basic Information | |
|---|---|
| Taxon OID | 3300017754 Open in IMG/M |
| Scaffold ID | Ga0181344_1003766 Open in IMG/M |
| Source Dataset Name | Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.D.D |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5240 |
| Total Scaffold Genes | 14 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (78.57%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Michigan | |||||||
| Coordinates | Lat. (o) | 43.2382 | Long. (o) | -86.2805 | Alt. (m) | Depth (m) | 8 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F006016 | Metagenome | 383 | Y |
| F042295 | Metagenome | 158 | Y |
| F085338 | Metagenome | 111 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0181344_100376614 | F006016 | N/A | MTTATQIQTEALISTITSDIDALYVLDQQAKALADQVKALKEAIANKYGEGEHKGELHSVTVKLIEVSGTVDYKKLCVSYGITDDVLATFRKEGRADIRVSPQK |
| Ga0181344_10037667 | F042295 | GGA | MALKNFTKFSKTEAIDDGPNSHYCFANGCPMAGGISTGGHWVCAYHHQGQSEDWPRVTQALRECENIRLAITEVMKIDMISWGAAVNGYPPKWQEFAALFDDEPELQPTEHEKIRKTKYEYRLRNELAIRAGLAKRKV |
| Ga0181344_10037668 | F085338 | GAGG | MTKHDAQKILSQIREGSGDTYTEACTLECLNLTGDLGTHEAVRGSGMDQPLHEEGYRARLRQRAILVAKSKE |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |