Scaffold Ga0181344

Basic Information
Taxon OID	3300017754 Open in IMG/M
Scaffold ID	Ga0181344_1000135 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.D.D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300017754 Open in IMG/M

Scaffold ID

Ga0181344_1000135 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.D.D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	30232
Total Scaffold Genes	35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	30 (85.71%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

30232

Total Scaffold Genes

35 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

30 (85.71%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: Michigan
Coordinates	Lat. (^o)	43.2382	Long. (^o)	-86.2805	Alt. (m)	Depth (m)	8
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Michigan

Coordinates

Lat. (^o)

43.2382

Long. (^o)

-86.2805

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F001299	Metagenome / Metatranscriptome	727	Y
F012328	Metagenome / Metatranscriptome	281	Y
F015856	Metagenome / Metatranscriptome	251	Y
F020635	Metagenome	223	Y
F026827	Metagenome / Metatranscriptome	196	Y
F030356	Metagenome	185	Y
F100336	Metagenome	102	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0181344_100013510	F001299	N/A	MNDINRPEYLDDTDPEKNYNYYRQDHGGMITNHNGIADKLLQNDDLYRSMKGDWSRTSWNKGNNIKVTTGRQDGKFFITREQQNIEEVKERVRNYRHAAELGIPDPMAPIGDDGNLTYKWMELPTVISIRISDQYFGGIPWTALKNDRTMKAQFYRVVETEYPQYVCYPGGKLPIPVAVSYPQRTG
Ga0181344_100013513	F015856	N/A	MIDENTIDFFNSRLTVDMSQPSKLTTGQKDQVRHYGSLAEALLKNRDLAMFVHHFKFSLADELASIRSHQPDDNARRIAVSNELAGIDNFVNSLKRAVYLKNRVGNTTEVPNT
Ga0181344_100013514	F030356	AGGA	MLNIKNIPVSDINQNKKTNANFVRMKNQMDVKMASYLRYLGTKNAVNRASDYHYLCLAVTDSTAPVNGIDYIHPSVKPVVDYATAVIAKGLMPNGEINFDFVADTEEDETAARQATNMVSKVVNQMNDPHFILERWIMDANMHKNGMMMIKPVRELINRYVETEGTLDQLRAYEQQAADSGLTTLRQGKRQLTVDMEKAMAEITQLLGEQEAQSAESMLDLADAAMRQAPEEFDQDSMSTAVGDMKLNEMDNQQQIIQDAIKRNTIYSAKYKLTGYNINIKFHPIAQHYWICDPTVPEMKDQPFCGYYDPMTIQEAVELYPGIDIEHFRVHAEYNMNGAYQAGSVLNNLAIHARDSVPVMGIPVSSAASADPDSRQVSIVTVWNKYDIDGDGELELIELIYSGSYIISAREVEFIPVANMCPKPLPGNFYGMSIAESVIPMQEYNTSAARAEIQLGLLTATPRIGVKPDRVDFEMMQDGESAIFILDSKFDPAKDIYQMPPPSGNLQFLEVAMNRIQQDTMAMVGMTTPSDVFNPEVMAPGNSGIKLQMALTPNQIIQDNTVRNAAEGLKEALYLVWRTLIQYGDDYGVKKLAQQCSDDKEPVFLDFASWDDMDFCDRKQIHLELALGMQSEENALGRLQIIQKCQQDLYSAIQGMLAQGMMTPEMYKKIKKPFADTLYVLGVKDCNTYLPSDDEVAGLVEKAQQAMQGKEPSPDDKQKLSVANLNDVKAKQIQMEVAGEDAETQLDFMSMAAGDPKVYS
Ga0181344_100013521	F100336	GGA	MTARDAEIHRAQEASRVSDTLILQKINASHRVAFAEKFPGQIEHILRLLTERLQAGLDKRDGVEIDNPDTWKMSSKELSDLSTAIHHIYIVKEKLRDVQSNTQ
Ga0181344_100013522	F012328	AGGA	MTKKLSPPATQEVASPWDEEPTQQEIIDVAEQVAGIAPKAISSADFDIDGLMTDFPTAKDLERFVFDETGIVLNLKGRANKLKYQVAMDVLNGIEVDPKFVGGDNPYIDKTELVPVEDLKPVPPRDNHLPEQTQLQNIFVSNVIPHTDFEARMQDKKVSVYFRKYKTGEISYEIVGPIEQRPHGVKLDKYGRERPEIIKWVDPRTGEQVIVRNDGTLTPQGRKLRGLMQSFKVNTSNQWDTWIDREFISLGGNGVTDVWDLSK
Ga0181344_100013525	F026827	AGGA	MHNMKSTNPMGNKAINQKRGPTTGNAGTMSKRETYVAEKTASSGEKSVLAKMVTDALEMRGRGQAGVTNPALESVSSNTNTGPKANSTANGSKLPAKYKSPKK
Ga0181344_10001355	F020635	AGGAG	MEFTLKQLSWIVIGSLGIGGTGYLSLNDKIDALDKKTAIIHTNTEHQTKALERIETKLNS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181344_1000135

Overview

Ecosystem & Geography

Associated Families

Sequences