NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181407_1014576

Scaffold Ga0181407_1014576


Overview

Basic Information
Taxon OID3300017753 Open in IMG/M
Scaffold IDGa0181407_1014576 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 30 SPOT_SRF_2012-01-26
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2215
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (12.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004523Metagenome434Y
F005491Metagenome / Metatranscriptome399Y
F008022Metagenome340Y

Sequences

Protein IDFamilyRBSSequence
Ga0181407_10145763F008022N/AMNKTELQVKIDQLALSIDQSNTITKNYETEVAELKKQLADLNKPKLTMKQFDELTTLVECGIEEFDFDDLDNYSIDYGIDYDNRVTCESFCFDNVSEIARVVCEKVYEMFAEAEEDTNEEKA
Ga0181407_10145766F005491N/AMSTFYKDTRVNGKLVSLEDIIEEVYQRALKNIDDSLYELLDDKDDEEFYMDYKEAFGHVVEQLNKFHNVED
Ga0181407_10145768F004523N/AMEYMSTEIRSAREAMTIFKILGIKEITTERQRKNGTQVFELPIQQMYQNLVPKPLRFATYKTGYVRNVSPYNSSSYQINKTKKRPAGTNGYHFEHVERILIQGWENRLIYLARFIIKNYYKKPTYLISNYTLSTLKVKNQHDRLRDQEYRLPFDEDDKFFCSTDDVQVIVNGHRYNLS
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