NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181400_1032016

Scaffold Ga0181400_1032016


Overview

Basic Information
Taxon OID3300017752 Open in IMG/M
Scaffold IDGa0181400_1032016 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 23 SPOT_SRF_2011-06-22
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1690
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014505Metagenome / Metatranscriptome262Y
F016957Metagenome / Metatranscriptome243N

Sequences

Protein IDFamilyRBSSequence
Ga0181400_10320161F016957N/AMCLAVAILVSGNNGSENLMICLMSLRKYLKGGISTLWNLSDAHIAILVDVGKSGEALFKELTGAIKSELADDKQHIDFYWGDKKVDVKGLKKSHHSGFILLEFINVWGGNGWCSKNSKAEFIAFQFPDKFYVFKKSDLRERALELCEEFDQDKVIRKNWIPYDDAKYKWVGRYNAQDVFT
Ga0181400_10320162F014505GGAMDRIEKFYRKNFKRLTGFIKQYTDGSYDIASDIVQMVFLRLLELEQEGRTNFYEDDSLSFFYVYRSCINTALKYQRAKKRIHKVDIDDLENYSYETYPEERDAMEKLILMMEKEMEDMHWYDSKMIRIHMEGNSMNKIHRETDIGLTSIKNTIKNGKAKIYDQIKEDWEDYENGDYDKI
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