NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187219_1023524

Scaffold Ga0187219_1023524


Overview

Basic Information
Taxon OID3300017751 Open in IMG/M
Scaffold IDGa0187219_1023524 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 13 SPOT_SRF_2010-07-21 (version 2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2227
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027054Metagenome / Metatranscriptome196N
F032856Metagenome / Metatranscriptome179N
F070144Metagenome / Metatranscriptome123N

Sequences

Protein IDFamilyRBSSequence
Ga0187219_10235242F027054N/AMTKQKKETSRHWTVELNIGQLKNMAPLKHSKRIGYYHGTHNLNQVRRTVQKRFDGGSGECVKSMFQFQGEYNDKPETTFYIAFSFYGGIETFKELDGLEGEYMAHDDRKKLEDKLLILCMELEQECIAYNIKEWTSSTFYPTGKQDLIYHPNYDGEQMIFEDEYFYTFGYHKLSSFDKLHSGTTTHVTNTETVG
Ga0187219_10235244F032856N/AMDEAKYRYWSSVYTDYLIDDISDELVNDYEGGANVADEFIVEEEYVRQLIEYWIDNYTMGNPKCKEIIDNLSYDIFEDDDEFGVRPDGWKQAGVWALDHAIHNDDNIQAIYKMTNEKLQELWKKTN
Ga0187219_10235245F070144N/AMEEDKLSGDNWSITRHTVHKDKYVARHINIWGSEAHTVDSLIEAVEIIDKFKNQEDWILQKREEFGDYMWNNDDFRKDITKGT
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