NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181352_1034414

Scaffold Ga0181352_1034414


Overview

Basic Information
Taxon OID3300017747 Open in IMG/M
Scaffold IDGa0181352_1034414 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.S.N
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1519
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.2382Long. (o)-86.2805Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010672Metagenome300Y
F021488Metagenome218Y
F023041Metagenome211Y

Sequences

Protein IDFamilyRBSSequence
Ga0181352_10344141F023041N/AMNNPPYDTGKVKIGLTYTPPPPESTPESDWIQGILLGDRRGMDDLTLTTIQSIGLIAFIVIVMLLTGGTSNA
Ga0181352_10344142F010672AGGAGGMPDIQTAFKTALSRTLQEWDDDGETVSPPLTINTTINNSVPQPSQGIPMKKTFNITNNISRVTFDYIKNNPGSTRKEIIEALEHQGFAGGSTSSLIAQMRRNKMIHETNNLYYADIDEYRPIKSLKALKKMEAPIAPPKRKYEKKAVTGIGALLREKLEKVPEPSQDALDAAAYAMGGHTPKRMVSLVRVKSPEDILKDMTVYQAHALYHHLKQMFGG
Ga0181352_10344145F021488AGGAMSDASFNQEDFDRIFGVPKDEIRENYPMIRNAVLEEVAQEFDAMRIAFGDTADSFATYVRDMKT
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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