NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181389_1043499

Scaffold Ga0181389_1043499


Overview

Basic Information
Taxon OID3300017746 Open in IMG/M
Scaffold IDGa0181389_1043499 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 12 SPOT_SRF_2010-06-29
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1328
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019389Metagenome230Y
F027481Metagenome / Metatranscriptome194Y
F040863Metagenome / Metatranscriptome161Y

Sequences

Protein IDFamilyRBSSequence
Ga0181389_10434991F027481GAGMKKKYLVKFNCIVGEYEHLETYIFDKQMTEYQYCKKFWGLSKKNELKTNVFWDDFEMNAIEVYSETEITKNQANNLKELGVA
Ga0181389_10434992F019389AGGMDNWKDDFIKFVNKMSKKKGWRCDDMNPYFYQIDLLHLSNAKTLREYKQQQKKASK
Ga0181389_10434993F040863N/AMEKKQIEKIQKRVNEINSILDTERDWNKIDSSALLTERADKEFLINKIGVNIRLTGNNKYYWGYQFVEFRKNIDLYGSNYGYKDIVGSKISFHKYSINQEYSQYSNDLWHFDSVEEMKGFVKGYNVMCSVLENKQEKKVA
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