NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181397_1009045

Scaffold Ga0181397_1009045


Overview

Basic Information
Taxon OID3300017744 Open in IMG/M
Scaffold IDGa0181397_1009045 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 20 SPOT_SRF_2011-02-23
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3107
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002318Metagenome / Metatranscriptome571Y
F002586Metagenome546N
F008385Metagenome334Y

Sequences

Protein IDFamilyRBSSequence
Ga0181397_100904510F002586GGAMIKVKLEANEVELALNIASKRYIGNLRMGKTFSYGYTKGIKSQLTDGILGALGEVAYAKATNSFYNGSYSDDKQFYSDSDFQNNIEIRSQEKKSYNFLLIRPGEKKGKYILIIKDNNEDFNFSIMGSFIYNDDLPPEKLTHLGHFERPPVYK
Ga0181397_10090452F002318AGGGGGMKAKDYKSITNILESQNKGKKFYDFMDIEDVKYRIKEDIVPLPKQYFNNIVKLIKGEK
Ga0181397_10090458F008385N/AVKILVKELDTLVKTNIYGDYKICVKCGDPADVIESNKDYCCECWFKKVNGKSFKEVDKQIKEEERFIKKK
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