NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181399_1025181

Scaffold Ga0181399_1025181


Overview

Basic Information
Taxon OID3300017742 Open in IMG/M
Scaffold IDGa0181399_1025181 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 22 SPOT_SRF_2011-05-21
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1640
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010532Metagenome302N
F032867Metagenome / Metatranscriptome179Y
F035272Metagenome / Metatranscriptome172N
F047975Metagenome / Metatranscriptome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0181399_10251812F032867AGGAGMDELEKMIDNLVDNHYRVQHLIGTEADESEYLADIEEEDDENN
Ga0181399_10251813F047975AGGAGGMRITKEEWAENTVDDMEWKDLVRIAYDVMLDSVKDMSDKEFKEYLIECGYEEEDDE
Ga0181399_10251815F035272GAGMYGRKMMTYKQWCDFRELLNILHIEVESKICDVKVEEAFDDVWDMVDEIDTTQEIV
Ga0181399_10251818F010532GAGMNRTLYKKLEDICAREYIINKLSANKFRTFVDFLYDDIRTWDKPMNVSEVDIIHRIEEHMSYMVSSFLNKSYEGIGMNEQSLREA
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