NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181428_1015597

Scaffold Ga0181428_1015597


Overview

Basic Information
Taxon OID3300017738 Open in IMG/M
Scaffold IDGa0181428_1015597 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 51 SPOT_SRF_2014-02-12
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1753
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019561Metagenome229Y
F031295Metagenome183N
F098051Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0181428_10155972F031295GAGGMVRAEEKLHGVISRLTDEYNNYPHKRLKKSEVQNLVHDLEVVDAEFHDLKLPPITDDIQLDNKVCLFYIINELKDIITEPNVEDVEKRLTDFHNTLVFNLGVNALHNHKNDWEDR
Ga0181428_10155974F019561GGAGGMTDKFSKPILRNLRTSLQDILKAECFGDKIPFEYTLGNCSFDEDQAKFQLIVTFKGNSVQDIAKKKQKEDLEHYAKYFDIDLERKHPRYTLVGYKIKSRKLPWIITDNQKSGEYIISDDQAKKLFGKQDVDTFLKGQREAQANG
Ga0181428_10155975F098051GGAGGMDKLRLSDLNDLRTWVDQMYWDFDRLSSSGQETLDKIADKLGMETNADVESRINRNIKDLEERNPTWTREKVYSEALRLG
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